class: center, middle, inverse, title-slide .title[ # R Presentations ] .author[ ### <br>Ying-Ju Tessa Chen, PhD <br><br> Associate Professor <br> Department of Mathematics<br> University of Dayton <br><br> <a href="https://twitter.com/ju_tessa"><svg viewBox="0 0 512 512" style="height:1em;position:relative;display:inline-block;top:.1em;fill:white;" xmlns="http://www.w3.org/2000/svg"> <path d="M459.37 151.716c.325 4.548.325 9.097.325 13.645 0 138.72-105.583 298.558-298.558 298.558-59.452 0-114.68-17.219-161.137-47.106 8.447.974 16.568 1.299 25.34 1.299 49.055 0 94.213-16.568 130.274-44.832-46.132-.975-84.792-31.188-98.112-72.772 6.498.974 12.995 1.624 19.818 1.624 9.421 0 18.843-1.3 27.614-3.573-48.081-9.747-84.143-51.98-84.143-102.985v-1.299c13.969 7.797 30.214 12.67 47.431 13.319-28.264-18.843-46.781-51.005-46.781-87.391 0-19.492 5.197-37.36 14.294-52.954 51.655 63.675 129.3 105.258 216.365 109.807-1.624-7.797-2.599-15.918-2.599-24.04 0-57.828 46.782-104.934 104.934-104.934 30.213 0 57.502 12.67 76.67 33.137 23.715-4.548 46.456-13.32 66.599-25.34-7.798 24.366-24.366 44.833-46.132 57.827 21.117-2.273 41.584-8.122 60.426-16.243-14.292 20.791-32.161 39.308-52.628 54.253z" /></svg> <span class="citation">@ying-ju</span></a> <br> <a href="https://github.com/ying-ju/"><svg viewBox="0 0 496 512" style="height:1em;position:relative;display:inline-block;top:.1em;fill:white;" xmlns="http://www.w3.org/2000/svg"> <path d="M165.9 397.4c0 2-2.3 3.6-5.2 3.6-3.3.3-5.6-1.3-5.6-3.6 0-2 2.3-3.6 5.2-3.6 3-.3 5.6 1.3 5.6 3.6zm-31.1-4.5c-.7 2 1.3 4.3 4.3 4.9 2.6 1 5.6 0 6.2-2s-1.3-4.3-4.3-5.2c-2.6-.7-5.5.3-6.2 2.3zm44.2-1.7c-2.9.7-4.9 2.6-4.6 4.9.3 2 2.9 3.3 5.9 2.6 2.9-.7 4.9-2.6 4.6-4.6-.3-1.9-3-3.2-5.9-2.9zM244.8 8C106.1 8 0 113.3 0 252c0 110.9 69.8 205.8 169.5 239.2 12.8 2.3 17.3-5.6 17.3-12.1 0-6.2-.3-40.4-.3-61.4 0 0-70 15-84.7-29.8 0 0-11.4-29.1-27.8-36.6 0 0-22.9-15.7 1.6-15.4 0 0 24.9 2 38.6 25.8 21.9 38.6 58.6 27.5 72.9 20.9 2.3-16 8.8-27.1 16-33.7-55.9-6.2-112.3-14.3-112.3-110.5 0-27.5 7.6-41.3 23.6-58.9-2.6-6.5-11.1-33.3 2.6-67.9 20.9-6.5 69 27 69 27 20-5.6 41.5-8.5 62.8-8.5s42.8 2.9 62.8 8.5c0 0 48.1-33.6 69-27 13.7 34.7 5.2 61.4 2.6 67.9 16 17.7 25.8 31.5 25.8 58.9 0 96.5-58.9 104.2-114.8 110.5 9.2 7.9 17 22.9 17 46.4 0 33.7-.3 75.4-.3 83.6 0 6.5 4.6 14.4 17.3 12.1C428.2 457.8 496 362.9 496 252 496 113.3 383.5 8 244.8 8zM97.2 352.9c-1.3 1-1 3.3.7 5.2 1.6 1.6 3.9 2.3 5.2 1 1.3-1 1-3.3-.7-5.2-1.6-1.6-3.9-2.3-5.2-1zm-10.8-8.1c-.7 1.3.3 2.9 2.3 3.9 1.6 1 3.6.7 4.3-.7.7-1.3-.3-2.9-2.3-3.9-2-.6-3.6-.3-4.3.7zm32.4 35.6c-1.6 1.3-1 4.3 1.3 6.2 2.3 2.3 5.2 2.6 6.5 1 1.3-1.3.7-4.3-1.3-6.2-2.2-2.3-5.2-2.6-6.5-1zm-11.4-14.7c-1.6 1-1.6 3.6 0 5.9 1.6 2.3 4.3 3.3 5.6 2.3 1.6-1.3 1.6-3.9 0-6.2-1.4-2.3-4-3.3-5.6-2z" /></svg> ying-ju</a> <br> <a href="mailto:ychen4@udayton.edu"><svg viewBox="0 0 512 512" style="height:1em;position:relative;display:inline-block;top:.1em;fill:white;" xmlns="http://www.w3.org/2000/svg"> <path d="M476 3.2L12.5 270.6c-18.1 10.4-15.8 35.6 2.2 43.2L121 358.4l287.3-253.2c5.5-4.9 13.3 2.6 8.6 8.3L176 407v80.5c0 23.6 28.5 32.9 42.5 15.8L282 426l124.6 52.2c14.2 6 30.4-2.9 33-18.2l72-432C515 7.8 493.3-6.8 476 3.2z" /></svg> ychen4@udayton.edu</a><br> ] --- ## Learning Objectives In this session, we will introduce - **R Markdown Presentation** - **ioslides:** Lightweight, HTML-based slides. - **Slidy:** General HTML slide support. - **beamer:** LaTeX-based PDF presentations. - **PowerPoint:** Direct PowerPoint slide generation. - **xaringan:** Highly customizable HTML slides using remark.js. - **flexdashboard:** Interactive dashboards that can act as slides - **Quarto:** Modern, versatile presentations supporting multiple formats. --- ## Rmarkdown Presentations In order to create a Rmarkdown presentation, we click .green[File] and then find .green[New File] and then .green[R markdown ...] There are four options: - Html (ioslides): This format allows us to create a slide show and the slides could be broken up into sections by using the heading tags # and ##. If a header is not needed, a new slide could be created using a horizontal rule (- - -). - Html (Slidy): Similar to ioslides, this format allows to create a slide show broken up into sections by using the heading tag ##. If a header is not needed, a new slide could be created using a horizontal rule (- - -). A Slidy presentation gives a table of content while an ioslides presentation doesn't. - PDF (beamer): This format allows to create a beamer presenation (LaTex). The slides could be broken up into sections by using the heading tags # and ##. If a header is not needed, a new slide could be created using a horizontal rule (- - -). - PowerPoint: This format allows you to create PowerPoint slide decks directly from R Markdown. The generated .pptx files are fully editable in Microsoft PowerPoint, enabling you to make additional tweaks if needed. **Note:" The extension of R markdown file is .blue[.Rmd]. --- ### Rmarkdown Presentations (Continued) <div class="figure" style="text-align: center"> <img src="data:image/png;base64,#../figs/presentation.JPG" alt="Creating a Rmarkdown Presentation" width="50%" /> <p class="caption">Creating a Rmarkdown Presentation</p> </div> --- ### Rmarkdown Presentations (Continued) In the following, we show an example of the header of a Rmarkdown file. <img src="data:image/png;base64,#../figs/Rmarkdown_heading.JPG" width="40%" style="display: block; margin: auto;" /> We can use the output option to manipulate which presentation we would like to have. - output: ioslides_presentation - output: slidy_presentation - output: beamer_presentation - output: powerpoint_presentation To render an R Markdown document into its final output format, we can click the .green[Knit] button to render the document in RStudio and RStudio will show a preview of it. The further settings for presentations could be found at [R Markdown: The Definitive Guide](https://bookdown.org/yihui/rmarkdown/presentations.html) --- ## xaringan Presentation A easy way to start creating a xaringan presentation is to use the R markdown template with .green[Ninja Presentation] or .green[Ninja Themed Presentation]. xarignan Presentation has a specific CSS format file: .green[xaringan-themer.css] that we can use to customize the theme of presentations. <div class="figure" style="text-align: center"> <img src="data:image/png;base64,#../figs/xaringan.JPG" alt="Creating a Rmarkdown Presentation" width="30%" /> <p class="caption">Creating a Rmarkdown Presentation</p> </div> A comprehensive tutorial regarding xaringan presentation could be found at [xaringan Presentation](https://bookdown.org/yihui/rmarkdown/xaringan.html). --- ## Flex Dashboard A easy way to start creating a Flex dashboard is to use the R markdown template with .green[Flex Dashboard]. <div class="figure" style="text-align: center"> <img src="data:image/png;base64,#../figs/dashboard.JPG" alt="Creating a Flex Dashboard" width="30%" /> <p class="caption">Creating a Flex Dashboard</p> </div> - We can use # to create multiple pages. - We can use .green[orientation] in the .green[output] options to specify the layout to be .green[columns] or .green[rows]. A comprehensive tutorial regarding Flex Dashboard could be found at [flexdashboard](https://pkgs.rstudio.com/flexdashboard/) --- ## Quarto for Presentations Quarto is a versatile, modern tool for creating dynamic presentations, supporting multiple languages like R, Python, and Julia. Here's why and how to use Quarto for presentations: **Advantages of Quarto:** - `Flexible Outputs:` Supports Reveal.js, Beamer, PowerPoint, and PDF outputs. - `Multi-Language Support:` Combine .green[R], .green[Python], .green[Julia], or other code in a single document (See [Quarto](https://quarto.org/)). - `Custom Themes:` Easily create custom themes with CSS or built-in options. - `Interactive Features:` Integrates seamlessly with interactive elements, such as HTML widgets and Shiny apps. To create a Quarto presentation with RStudio, we click .green[File] and then find .green[New File] and then .green[Quarto Presentation ...]. **Note:** The extension for a Quarto file is .blue[.qmd]. --- ## Comparison <div class="datatables html-widget html-fill-item" id="htmlwidget-a2cb86ca4c98feff2dc6" style="width:100%;height:auto;"></div> <script type="application/json" data-for="htmlwidget-a2cb86ca4c98feff2dc6">{"x":{"filter":"none","vertical":false,"caption":"<caption>Comparison of R Markdown Presentation Formats<\/caption>","data":[["1","2","3","4","5","6"],["Output Type","Customizable","Interactivity","Code Support","Ease of Use","Themes"],["HTML","Basic","Minimal","Yes","Easy","Limited"],["HTML","Moderate","Minimal","Yes","Easy","Limited"],["PDF","High","None","Yes","Moderate","Extensive"],["PPTX","Moderate","None","Yes","Easy","Limited"],["HTML","High","High","Yes","Moderate","Extensive"],["HTML","Moderate","High","Yes","Moderate","Moderate"],["HTML, PDF, PPTX","High","High","Yes (multi-language)","Moderate","Extensive"]],"container":"<table class=\"hover\">\n <thead>\n <tr>\n <th> <\/th>\n <th>Feature<\/th>\n <th>ioslides<\/th>\n <th>Slidy<\/th>\n <th>Beamer<\/th>\n <th>PowerPoint<\/th>\n <th>xaringan<\/th>\n <th>flexdashboard<\/th>\n <th>Quarto<\/th>\n <\/tr>\n <\/thead>\n<\/table>","options":{"initComplete":"function(settings, json) {\n$(this.api().table().header()).css({'background-color': '#4582ec', 'color': '#fff'});\n}","columnDefs":[{"orderable":false,"targets":0},{"name":" ","targets":0},{"name":"Feature","targets":1},{"name":"ioslides","targets":2},{"name":"Slidy","targets":3},{"name":"Beamer","targets":4},{"name":"PowerPoint","targets":5},{"name":"xaringan","targets":6},{"name":"flexdashboard","targets":7},{"name":"Quarto","targets":8}],"order":[],"autoWidth":false,"orderClasses":false},"selection":{"mode":"multiple","selected":null,"target":"row","selectable":null}},"evals":["options.initComplete"],"jsHooks":[]}</script> --- ## Instructions for Hosting HTML Files via Bitbucket We assume that the audience is familiar with the Bitbucket platform. Follow these steps to host HTML files via Bitbucket: .small[ - **Create or Select a Workspace:** If you don’t already have a workspace, create one. For example, let's name the workspace .green[presentations]. - **Create a Repository:** Inside the workspace, create a repository with the name .green[presentations.bitbucket.io]. Here, the name of the repository must be .red[name of workspace].green[.bitbucket.io]. - **Upload HTML Files:** Add your HTML files (e.g., .green[file1.html], .green[file2.html], etc.) to this repository. If you organize files into folders within the repository, ensure the structure matches your intended URLs. - **Access Your Files via URL:** Once uploaded, the files can be accessed at: - .green[https://presentations.bitbucket.io/file1.html] - .green[https://presentations.bitbucket.io/file2.html] - **If the files are saved in a folder, their URLs will follow this structure:** - .green[https://presentations.bitbucket.io/foldername/file1.html] - .green[https://presentations.bitbucket.io/foldername/file2.html] .red[Tired of Using git commands to upload files to Bitbucket?] Watch this video to learn [how to use GitHub desktop with Bitbucket](https://www.youtube.com/watch?v=FO-LLKc2GC8). ] --- # Summary of Main Points By now, you should know how to create different types of presentation such as - **R Markdown Presentation** - **ioslides:** Lightweight, HTML-based slides. - **Slidy:** General HTML slide support. - **Beamer:** LaTeX-based PDF presentations. - **PowerPoint:** Direct PowerPoint slide generation. - **xaringan:** Highly customizable HTML slides using remark.js. - **flexdashboard:** Interactive dashboards that can act as slides - **Quarto:** Modern, versatile presentations supporting multiple formats. --- ## In-Class Activity To be announced in class. <br> ## Thank you! .pull-left-2[ Please do not hesitate to contact me (Tessa Chen) at <a href="mailto:ychen4@udayton.edu"><i class="fa fa-paper-planee fa-fw"></i?&nbsp: ychen4@udayton.edu</a> for questions or further discussions. ] .pull-right-2[ <img src="data:image/png;base64,#../figs/Tessa_grey_G.gif" width="50%" style="display: block; margin: auto;" /> ]